Extract unproductive sequences from a RepSeqExperiment object, which include:
- out-of-frame sequences: sequences with frame shifts based on the number of nucleotides in the ntCDR3 column
- sequences containing stop codons: aaCDR3s with a "*" or "~" symbols.
Arguments
- x
an object of class
RepSeqExperiment
.
Value
a filtered RepSeqExperiment
object exclusively
containing unproductive sequences.
Examples
data(RepSeqData)
unproductiveData <- getUnproductive(x = RepSeqData)