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Exclude a sequence from a RepSeqExperiment object.

Source: R/basicFunctions.R
filterSequence.Rd

This function allows to drop of one or several sequences from a RepSeqExperiment object in all samples or a specified group of samples.

Usage

filterSequence(
  x,
  level = c("aaClone", "ntClone", "aaCDR3", "ntCDR3"),
  name,
  group = NULL
)

Arguments

x

an object of class RepSeqExperiment

level

a character specifying the level of the repertoire to be taken into account. Should be one of "aaClone","ntClone", "ntCDR3" or "aaCDR3".

name

a vector of character specifying the name(s) of the sequence(s) to filter out from the RepSeqExperiment object.

group

a vector of character indicating the group column name in the mData slot and one experimental group within this column.

Value

a RepSeqExperiment object.

Examples


RepSeqData<- filterSequence(x = RepSeqData,
                            level="aaClone",
                            name="TRAV13-2 CAETQSLQRALIGNLQSPISRF TRAJ50",
                            group=c("cell_subset","nTreg"))